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paired design
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2
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5
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1.6k
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DESeq2 problem with outlier replacement in paired multi-factor design
deseq2
differential gene expression
multiple factor design
paired design
7.3 years ago
gregory.l.stone
▴ 10
3
votes
3
replies
1.4k
views
Difficulties with probable batch effect in paired blocked (treatment and placebo) experiment
deseq2
edger
limma
batch effect
paired design
6.2 years ago
Vladimir Krasikov
▴ 90
2
votes
2
replies
1.4k
views
EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger
design matrix
glmlrt()
glmQFTest()
paired design
5.6 years ago
oakhamwolf
• 0
3
votes
4
replies
1.2k
views
Complicated unbalanced block DOE with partially paired samples and analysis
limma
complex-design
paired design
updated 6.2 years ago by
Aaron Lun
★ 28k • written 6.2 years ago by
ML18
▴ 10
4
votes
3
replies
1.1k
views
Differential profile for only one normal - tumor pair
edger
degs
paired design
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
takumima
▴ 10
1
vote
3
replies
1.0k
views
Setting up the design for paired analysis
edger
limma
paired design
5.5 years ago • updated 5.4 years ago
candida.vaz
▴ 50
2
votes
3
replies
871
views
Drug response pre- and post-treatment between timepoints across conditions
RNA-seq
Paired design
Timecourse
Diagnosis
Covariates
updated 4.2 years ago by
Kevin Blighe
★ 3.9k • written 4.2 years ago by
ibrahim.akkouh
• 0
7 results • Page
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Comment: How to run allelic imbalance in apeglm
by
parayod376
• 0
Which I care about. [Papa's games][1] thank you for sharing the information. [1]: https://papasgamesfree.github.io
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
FYI, I emailed Benilton and he says he's working on a fix, so stay tuned!
Answer: Error in render R qmd document (could not find function "process")
by
James W. MacDonald
66k
If you have functions in another R document, you have to `source` that document to load the functions into your workspace. Just like you wo…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
Thank you! I ended up running it with a gtf on command line, partially because I couldn't figure out how to list multiple files in R for in…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
For some reason, that's still not working for me on command line. I ended up figuring out another way around, though, by converting the g…
Votes
Reduce the number of nodes appear in the cnetplot of clusterprofiler
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
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